Predicting Post-Fire Tree Mortality for 12 Western US Conifers Using the First Order Fire Effects Model (FOFEM)
Fire Ecology volume 13, pages 66–84 (2017)
Accurate prediction of fire-caused tree mortality is critical for making sound land management decisions such as developing burning prescriptions and post-fire management guidelines. To improve efforts to predict post-fire tree mortality, we developed 3-year post-fire mortality models for 12 Western conifer species—white fir (Abies concolor [Gord. & Glend.] Lindl. ex Hildebr.), red fir (Abies magnifica A. Murray bis), subalpine fir (Abies lasiocarpa [Hook.] Nutt.), incense cedar (Calocedrus decurrens [Torr.] Florin), western larch (Larix occidentalis Nutt.), lodgepole pine (Pinus contorta Douglas ex Loudon var. latifolia Engelm. ex S. Watson), whitebark pine (Pinus albicaulis Engelm.), ponderosa pines (Pinus ponderosa Lawson & C. Lawson var. scopulorum Engelm and var. ponderosa C. Lawson), Jeffrey pine (Pinus jeffreyi Balf.), sugar pine (Pinus lambertiana Douglas), Engelmann spruce (Picea engelmannii Parry ex Engelm.), and Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco var. glauca [Beissn.] Franco)—by pooling data collected from multiple fire-injury studies. Two sets of models were created: one for use in pre-fire planning in which only crown injury and tree diameter (DBH) were potential variables, and a second, optimal model for use in post-fire planning that used all significant variables. Predictive accuracy of all models was compared to the accuracy of the general, non-species specific mortality model used in the First Order Fire Effects Model (FOFEM) prior to version 5.7. The new species-specific models improved prediction of fire-caused tree mortality by 0 % to 48 %. Model accuracy increased the most for red fir, incense cedar, western larch, and whitebark pine, and increased the least for Engelmann spruce. The models in the post-fire option provided higher accuracy compared to the pre-fire models, but also required additional inputs. These new models were added to FOFEM beginning with version 5.7, and the options in the FOFEM Mortality Module were expanded. We describe the new options in FOFEM and how to use the software to predict tree mortality for pre-fire and post-fire planning, as well as modeling limitations and assumptions. The additions to FOFEM offer improved accuracy in predicting post-fire tree mortality for 12 Western conifer species and allow direct inputs of fire injury to increase software applicability to prescribed fire and post-fire forest management.
La predicción precisa de la mortalidad causada por el fuego es crítica para tomar decisiones apropiadas en la gestión de tierras, tales como el desarrollo de las prescripciones de quema y directrices en el manejo post-fuego. Para mejorar los esfuerzos para predecir la mortalidad de árboles post-fuego, desarrollamos modelos de mortalidad de 3 años post-fuego para 12 especies de coníferas del Oeste—abeto blanco (Abies concolor [Gord. & Glend.] Lindl. ex Hildebr.), abeto rojo (Abies magnifica A. Murray bis), abeto subalpino (Abies lasiocarpa [Hook.] Nutt.), libo-cedro de California (Calocedrus decurrens [Torr.] Florin), alerce americano (Larix occidentalis Nutt.), pino contorta (Pinus contorta Douglas ex Loudon var. latifolia Engelm. ex S. Watson), pino de corteza blanca (Pinus albicaulis Engelm.), dos variedades de pino ponderosa (Pinus ponderosa Lawson & C. Lawson var. scopulorum Engelm and var. ponderosa C. Lawson), pino de Jeffrey (Pinus jeffreyi Balf.), pino lambertiana (Pinus lambertiana Douglas), picea de Engelmann (Picea engelmannii Parry ex Engelm.), y pino oregón (Pseudotsuga menziesii [Mirb.] Franco var. glauca [Beissn.] Franco) reuniendo datos recolectados de múltiples estudios sobre daños por fuego. Dos conjuntos de modelos fueros creados: uno para planificación pre-fuego, en el cual solo el daño en la copa y en el diámetro a la altura del pecho de los árboles (DAP) fueron las variables potenciales, y el segundo, un modelo óptimo para usar en planificación post-fuego que utilizó todas las variables significativas. La precisión en la predicción de todos los modelos fue comparada con la precisión del modelo general de mortalidad que no especifica las especies, utilizado en el Modelo de Efectos del Fuego de Primer Orden (FOFEM por su sigla en inglés), previa a la versión 5.7. Los nuevos modelos especie-específicos mejoraron la predicción de la mortalidad de árboles causada por fuego desde un 0 % a un 48 %. La precisión del modelo aumentó más para el abeto rojo, el libo-cedro de California, el alerce americano y el pino de corteza blanca, y en menor medida para la picea de Engelmann. Los modelos en la opción post-fuego proporcionaron una precisión más alta comparados con los modelos pre-fuego, pero también requirieron aportes de datos adicionales. Estos nuevos modelos fueron agregados al FOFEM comenzando con la versión 5.7, y las opciones en el Módulo de Mortalidad del FOFEM fueron expandidas. Describimos las nuevas opciones en el FOFEM, y cómo usar el software para predecir la mortalidad de los árboles para la planificación pre-fuego y post-fuego, como así también las limitaciones y supuestos del modelo. Los agregados al FOFEM ofrecieron una precisión mejorada en la predicción de la mortalidad de los árboles post-fuego para 12 especies de coníferas del Oeste, y permitieron incorporar datos sobre daño directos por fuego, aumentando así la aplicabilidad del software para quemas prescriptas y el manejo forestal post-fuego.
Accurate prediction of post-fire tree mortality is critical for making sound land management decisions and assessing fire severity (Reinhardt and Dickinson 2010, Gill et al. 2012, Ryan et al. 2013). Typically, predicting fire-caused tree mortality is applied in one of two ways: stand-level assessments and individual tree assessments (Hood et al. 2007). Stand-level mortality predictions are used to develop prescribed fire burn plans, post-fire silvicultural prescriptions, and to quantify larger-scale spatial patterns of wildland fire, while individual tree mortality predictions are used to develop post-fire salvage and hazard tree marking guidelines (Reinhardt and Dickinson 2010).
Post-fire tree mortality is influenced by a several factors, with direct death resulting from injury to tissues in the crown, stem, and roots (Dickinson and Johnson 2001, Michaletz and Johnson 2007). Second-order factors, such as bark beetles, disease, competition, and pre-fire and post-fire climate, can also cause substantial levels of additional mortality above first-order, direct fire effects (Hood and Bentz 2007, van Mantgem et al. 2013). While the exact mechanisms of tree death are still unknown, even without fire (Anderegg et al. 2015), statistical models of fire-caused tree mortality based on fire injuries and tree size are useful and necessary until process-based models are developed (Butler and Dickinson 2010, Kavanagh et al. 2010).
Numerous post-fire mortality models have been developed for western US conifers (Woolley et al. 2012). Ryan and Reinhardt (1988) developed the original logistic regression mortality model used in today’s United States fire behavior and effects software systems, which was then updated by Ryan and Amman (1994) and used in the First Order Fire Effect Model (FOFEM) prior to version 5.7, making it perhaps the most widely used post-fire mortality model in the US (Hood et al. 2007). This model also is included in the BehavePlus (Andrews 2009), and the Fire and Fuels Extension to the Forest Vegetation Simulator (FFE-FVS; Reinhardt and Crookston 2003). Hood et al. (2007) evaluated the predictive accuracy of the Ryan and Amman model for both stand and individual tree mortality applications for 13 Western conifer species with independently collected post-fire tree mortality data from across the western US. Predicted stand-level mortality was within ±20 % of observed mortality for all species except incense cedar (Calocedrus decurrens [Torr.] Florin), western larch (Larix occidentalis Nutt.), red fir (Abies magnifica A. Murray bis), and western hemlock (Tsuga heterophylla [Raf.] Sarg.). Individual tree mortality prediction was most accurate for subalpine fir (Abies lasiocarpa [Hook.] Nutt.), incense cedar, ponderosa pine (Pinus ponderosa Lawson & C. Lawson), and Jeffrey pine (Pinus jeffreyi Balf.).
The reason that the Ryan and Amman mortality model is so widely applied is due to its simplicity. Only two inputs are required to run the model: bark thickness and percent crown volume scorched. Bark thickness is used as a measure of thermal resistance to the cambium in the tree stem (Butler and Dickinson 2010) and is calculated from species-specific coefficients and diameter at breast height (1.37 m above ground; DBH). Bark thickness coefficients are included for 219 species, allowing prediction of fire-induced tree mortality for most forest species in the US. Crown volume scorch is calculated from either flame length or scorch height and crown characteristics. In FOFEM, the user must also enter tree height and live crown ratio, which is then used to calculate live crown length and crown base height, and convert crown length scorched to crown volume scorched (Reinhardt et al. 1997). This series of nested models allows mortality prediction for any tree for which bark thickness, tree height, crown ratio, and scorch height are known. The FOFEM graphics option allows easy visualization of general thresholds at which the chance that a tree will die from fire for a given flame length or scorch height begins to sharply increase along the predicted mortality response curvet. Thus, FOFEM can be used for pre-fire planning purposes to develop burn prescriptions that help meet specific tree-mortality related objectives. For example, burn objectives often include acceptable limits to mortality of trees over a specific DBH, or targets to kill a proportion of the smaller-diameter trees that can act as ladder fuels (Ryan et al. 2013).
The simplicity of the Ryan and Amman mortality model also limits its usefulness for post-fire planning purposes. In this situation, mortality models are typically applied to an individual tree for which the actual crown volume scorch percentage is known. Directly entering the crown volume scorch value will always provide better estimates of tree mortality than will calculating scorch as described above. In addition, other fire injury variables and secondary effects such as bark beetle attacks may also be known. Expanding the mortality models in FOFEM to allow for direct inputs of fire injury and to account for secondary factors could possibly increase the predictive accuracy of post-fire tree mortality.
Here, we used the same dataset from Hood et al. (2007) to describe post-fire tree mortality for 12 widespread western USA conifers: subalpine fir, red fir, white fir (Abies concolor [Gord. & Glend.] Lindl. ex Hildebr.), Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco var. glauca [Beissn.] Franco), incense cedar, western larch, Engelmann spruce (Picea engelmannii Parry ex Engelm.), whitebark pine (Pinus albicaulis Engelm.), lodgepole pine (Pinus contorta Douglas ex Loudon var. latifolia Engelm. ex S. Watson), ponderosa pine (Pinus ponderosa Lawson & C. Lawson var. scopulorum Engelm and var. ponderosa C. Lawson), Jeffrey pine, and sugar pine (Pinus lambertiana Douglas). Our specific objectives were to:
Develop species-specific 3-year post-fire mortality models,
Compare the species-specific models with the predictive accuracy of the Ryan and Amman model to determine potential improvements to FOFEM, and
Update the FOFEM Mortality Module user options to include bark beetle attacks and cambium kill.
We developed new mortality models with improved prediction capability and added these models to FOFEM version 5.7 (Lutes 2012) and ensuing versions. We also updated the user interface in FOFEM to increase prediction options, especially when using the software to model post-fire individual tree mortality. The additions to FOFEM offer improved accuracy in predicting post-fire tree mortality for 12 Western conifer species and allow direct inputs of fire injury to increase software applicability to prescribed fire and post-fire forest management.
We pooled data from previously published and unpublished fire-injury studies from 23 fires in Arizona, California, Idaho, Montana, and Wyoming, USA. Data included 17 144 sample trees and 12 coniferous species (Table 1). Three-year post-fire tree mortality was used for all fires. Fires occurred between 1982 and 2004 and included both prescribed fires and wildfires. Sample trees covered a broad range of diameters and crown and cambium injury.
Field sampling methods were similar across studies; however, not all variables were collected for each fire. Species, DBH, and percentage crown volume scorched or percentage crown length scorched were assessed for each tree within 1 year post fire. Because of morphological and management similarities, ponderosa and Jeffrey pines from fires in California were grouped into one yellow pine category during data collection. Though species-level comparisons for these species would be ideal, it was not possible with the available data. For the majority of trees, cambium kill rating (CKR) and bark beetle attacks were also assessed. All trees were monitored annually for three years post fire for mortality. Trees were considered dead when no green foliage remained in the crown, regardless of beetle attack timing.
Both crown volume scorched and crown length scorched values were visually assessed based on the proportions of the pre-fire crown that were either scorched or consumed (i.e., had pale green, brown, or blackened needles). These variables are not interchangeable (Peterson 1985, Hood et al. 2010). Crown volume scorched equals the percentage of the pre-fire crown volume of which needles were either scorched or consumed and could include areas with live and dead buds. Total tree height, pre-fire crown base height, and the average height of crown scorch were measured to calculate percentage crown length scorched. FOFEM calculates crown volume scorched from crown length scorched (Hood et al. 2007); however, for model validation, we used our direct estimates of crown volume scorched that we obtained in the field, as recommended by Peterson (1985).
FOFEM does not differentiate between crown needle scorch and bud kill. While these variables are approximately equal for most species, the difference can be substantial for some Western conifer species with large or protected buds such as ponderosa pine, Jeffrey pine, and western larch (Dieterich 1979, Hood et al. 2010). Both crown bud kill and crown needle scorch were assessed on 5635 ponderosa pine and Jeffrey pine trees to test if accounting for differences in crown kill and scorch improved prediction of tree mortality. Crown bud kill equals the percentage of pre-fire crown volume of which buds were killed either by heated air (i.e., scorched) or consumed by flame contact. Crown scorch equals the percentage of the pre-fire crown volume of which needles were either scorched or consumed and could include areas in the crown with live and dead buds.
Trees assessed for CKR were visually divided at the base into quadrants. Quadrants for most fires were oriented with the slope, with one quadrant on the uphill side, one on the downhill side, and two on the cross-slope. In flat areas and in the California fire sites, quadrants were oriented in the cardinal directions. In the center of each quadrant, cambium status at groundline was visually assessed, as described by Ryan (1982), by removing a small portion of the bark to reveal the cambium. Live cambium is light in color, moist, and pliable. Dead cambium is darker in color and either viscous (i.e., resinosis) or hardened. Cambium kill rating (CKR) was calculated by summing the number of dead cambium samples per tree (0 to 4).
For ponderosa pine trees from the Air Patrol, Brewer, and Early Bird fires in eastern Montana, cambium status was determined on 307 randomly selected trees (of 1748 total trees) by removing a sample of cambium at groundline from each quadrant using an increment borer and then treating it with 1 % orthotolidine vital stain solution in the field to determine visually if the tissue was alive based on a color reaction (see Ryan 1982 for detailed methods).
Beetle assessment varied by tree species and fire-injury study. Ambrosia beetles (Trypodendron spp Stephens and Gnathotrichus spp. Eichh.) were noted for white fir; red turpentine beetles (RTB; Dendroctonus valens LeConte) and mountain pine beetles (Dendroctonus ponderosae Hopkins) for sugar pine, ponderosa pine, and Jeffrey pine; engraver beetles (Ips spp. De Geer) for ponderosa pine and Jeffrey pine; and Douglas-fir beetle (Dendroctonus pseudotsugae Hopkins) for Douglas-fir. For the current analyses, all trees were coded as either attacked or unattacked based on the more detailed attack data collected in the original studies (for details, see Ryan and Amman 1994, McHugh and Kolb 2003, Hood and Bentz 2007, Hood et al. 2010). Trees were monitored annually for three years post fire for additional beetle attacks, with the exception of the trees in the California fires. Attacks were only noted one year following the fire for these trees.
Tree mortality modeling. All trees were coded as either 0 (live) or 1 (dead) based on post-fire year 3 status. The probability of tree death within three years post fire was modeled using general linear models with a binomial error distribution, logit link function specified, and the model form:
where P m is the probability of mortality; β0, β1, and βk are regression coefficients; and X 1 and X k are independent variables. Model variable screening was performed in SAS using PROC LOGISTIC (version 9.1; SAS Institute, Cary, North Carolina, USA). All final models were developed using either PROC GENMOD or PROC LOGISTIC. Within-subject correlation was accounted for using the REPEATED statement in which trees were grouped into plots (PROC GENMOD). If trees were not grouped into plots (e.g., California fires), PROC LOGISTIC was used. Only variables with P-values ≤0.05 and non-significant Hosmer-Lemeshow goodness of fit tests were retained in the full models.
We first attempted to develop one mortality model for all species, similar to the Ryan and Amman (1994) model in FOFEM. However, this model lacked sufficient predictive accuracy for all species and this effort was discontinued in favor of species-specific models.
Pre-fire and post-fire models were developed for each species, with two exceptions. Lodgepole pine and whitebark pine were grouped because of the small sample size of whitebark pine (n = 147) and because there were no statistical differences between DBH, crown volume scorched, and CKR between the two species. Because the ponderosa pines and Jeffrey pines from fires in California were grouped into one yellow pine category during data collection, they were modeled together. The pre-fire model is designed for planning prescribed burns and uses a limited set of variables to predict tree mortality. Candidate variables for the pre-fire mortality model included DBH and crown scorch. The post-fire model is the most accurate model for predicting tree mortality and is likely the most useful in post-fire planning, such as creating individual tree marking guidelines. Candidate variables for the post-fire model included DBH, crown scorch, CKR, and beetle attack. Due to differences in data collection methods among the datasets available for analysis, we developed separate crown volume scorched and crown volume killed models for ponderosa pine and Jeffrey pine and used crown length scorched for white fir, red fir, incense cedar, and sugar pine models, while all other species models used crown volume scorched. Based on plots of the logits, CKR was included as a continuous rather than class variable (Hosmer and Lemeshow 2000).
We cross-validated each final model to obtain a weighted classification table to determine prediction accuracy. Each species dataset was divided into 10 approximately equal groups for the cross-validation exercise. Groups were assigned based on fires so that each group contained either all of the observations from a given fire or a randomly chosen subset of observations from the same fire. Therefore, each group contained observations from one fire only. We did this in order to compare accuracies both between and within fires. We then ran the logistic regression model 10 times, leaving one group out each a time. Trees with predicted probabilities of mortality ≥0.5 were then classified as dead and trees with probabilities of mortality <0.5 were classified as alive for each model run. We used these classifications to calculate the weighted percentage of trees that were correctly predicted to live and die.
Tree Mortality Modeling
Pre-fire models. We developed models for 12 species from 16 838 trees. We could not use all trees for each analysis; therefore, the sampling size differs slightly by analysis. Yellow pine (43 %), white fir (14 %), lodgepole pine (13 %), and Douglas-fir (9 %) composed the majority of the total dataset (Table 2). All species except red fir included almost the full range of crown scorch values (0 to 100), while red fir only extended to 89 % crown length scorched. Crown scorch median values varied greatly among species, from low values <5 % for lodgepole pine, whitebark pine, and western larch, to high values of >70 % for subalpine fir, white fir, and ponderosa pine and Jeffrey pine (Table 2). The smallest trees sampled were generally 10 cm DBH for most species, except for trees in the California dataset (red fir and white fir minimum DBH = 15 cm, and incense cedar and sugar pine minimum DBH = 25 cm). The maximum DBH that was sampled varied widely by species (Table 2).
The importance of crown scorch and tree size (i.e., DBH) in predicting post-fire mortality varied by species. Crown scorch was a significant variable in all tree-mortality models, with the probability of mortality increasing with increasing crown scorch (Table 3). DBH was only included in the western larch, whitebark pine, and lodgepole pine mortality models. The probability of mortality decreased with increasing DBH. DBH was a significant variable in many of the models; however, the Hosmer-Lemeshow goodness of fit test was significant, indicating a poor model fit. In these cases, DBH was dropped from the model and the Hosmer-Lemeshow goodness of fit test became non-significant.
All pre-fire models were more accurate than the Ryan and Amman model used in versions of FOFEM prior to 5.7 (Figure 1a). Improvement over the current model was primarily because of better prediction of trees that died. Little improvement was made in predicting trees that survived and, in many cases, there was a decrease in accuracy with the new models. Over all species, the new models offer an 11 % improvement over the Ryan and Amman model (15 % in mortality; 0 % in survival).
The models correctly predicted mortality and survival for over 90 % of incense cedar, subalpine fir, and western larch using a predicted probability of mortality cutoff value (hereafter cutoff) of 0.5 (Table 4). Prediction of Engelmann spruce survival was poor, with no trees correctly predicted to survive three years post fire.
Post-fire models. We developed models for 12 species from 13 284 trees. The sample size was reduced from the pre-fire model dataset because not all studies assessed CKR. As in the pre-fire model development, yellow pine (31 %), white fir (17 %), lodgepole pine (15 %), and Douglas-fir (11 %) composed the majority of the total dataset (Table 5).
Crown scorch and CKR were significant in all post-fire tree mortality models, but the importance of DBH varied by species (Table 6). The probability of mortality increased with increasing crown scorch and CKR. DBH was only significant for explaining white fir, whitebark pine, lodgepole pine, and Douglas-fir mortality (P ≤ 0.05). The probability of mortality decreased with increasing DBH for whitebark pine and lodgepole pine. For white fir, however, the probability of mortality increased with increasing DBH. For Douglas-fir, probability of mortality decreased with increasing DBH for unattacked trees, but increased for attacked trees. DBH was a significant variable in many of the other models, but was not included due to significant values for the Hosmer-Lemeshow goodness of fit test. For ponderosa pine and Jeffrey pine, the crown volume kill model was about 5 % more accurate than the crown volume scorched model (Table 4; Figure 1b).
All post-fire models were more accurate than the Ryan and Amman model in versions of FOFEM prior to 5.7 (Figure 1b). Increased accuracy over the older versions of FOFEM was primarily because of better prediction of trees that died, an improvement of over 40 % for some species. As in the pre-fire models, mortality prediction was improved more than survival prediction. Over all species, the new models offer a 15 % improvement over the Ryan and Amman model (22 % in mortality, 4 % in survival).
The models correctly predicted mortality and survival for over 90 % of incense cedar, subalpine fir, and western larch using a cutoff of 0.5 (Table 4). Including CKR in the models improved prediction, especially for spruce (+18 %) and lodgepole pine and whitebark pine (+16 %). The additional model variables offered a 2 % to 4 % increase in accuracy for the other species, except incense cedar. The incense cedar pre-fire model was slightly more accurate (1 %) than the post-fire model at classifying live and dead trees using the cutoff 0.5 (Table 4).
Predicting Fire-Caused Tree Mortality
The species-specific models presented here offer improved accuracy to the Ryan and Amman model embedded in the FOFEM mortality module prior to version 5.7. The Ryan and Amman model is based on data from seven conifer species, with the majority of the data coming from Douglas-fir. The Ryan and Amman model does not include data for several of the species included here—whitebark pine, red fir, white fir, incense cedar, ponderosa pine, Jeffrey pine, nor sugar pine. The models generally predict mortality better than survival. The species models for red fir, incense cedar, and western larch offer over 20 % improvement in predicting which trees will die within three years post fire for the simplest, pre-fire models, and over 30 % improvement for the post-fire models that take into account cambium injury. The new pre-fire models increased accuracy over the Ryan and Amman model by <10 % accuracy for white fir, sugar pine, ponderosa pine, and Jeffrey pine, which is somewhat surprising considering that no data for these species was used for model development. Additional species need evaluation, as currently FOFEM predicts post-fire mortality for approximately 205 species that have no data supporting model development. We note that our grouping of ponderosa pine and Jeffrey pine and also whitebark pine and lodgepole pine could mask differences in fire responses between these species. Additional research is needed to determine if species groups are suitable for predicting post-fire mortality. We reasoned that grouping similar species was warranted in developing empirical models geared towards management purposes. However, we advise that studies of the mechanistic causes of tree death should likely not group species without prior testing.
The Ryan and Amman model uses DBH to predict bark thickness, which functions as semi-mechanistic variable of heat resistance in the model. Bark thickness is the largest factor influencing the rate of heat transfer to the underlying cambium, but other bark properties are also involved, such as fissures, moisture content, density, and thermal conductivity (Dickinson and Johnson 2001, Chatziefstratiou et al. 2013). Because of the importance of bark thickness in protecting the stem during fire, the original model may perform satisfactorily for species with accurate bark thickness coefficients, especially for species with thicker bark (i.e., high basal heat resistance). The accuracy of bark thickness coefficients is largely unknown for most species and requires additional research. In one of the only studies examining the bark thickness equations used in FOFEM and other fire effects models, Zeibig-Kichas et al. (2016) reported bark thickness was underpredicted for several conifers. In addition, bark thickness does not always increase linearly with DBH (Jackson et al. 1999), as is assumed in FOFEM, which could lead to overprediction of bark thickness for large-diameter trees.
The new pre-fire models also offer little improvement for the conifers used to develop the Ryan and Amman model: subalpine fir, lodgepole pine, Engelmann spruce, and Douglas-fir. In particular, the pre-fire Engelmann spruce model was worse in predicting both mortality and survival compared to the Ryan and Amman model. In versions prior to 5.7, FOFEM calculated all species of spruce using the Ryan and Amman equation, but then constrained mortality to at least 80 %, highlighting the difficulty that has surrounded predicting Engelmann spruce mortality (Lutes 2012).
Crown injury is often the most important predictor of post-fire tree mortality, and most logistic regression-based models use some measure of crown injury (Sieg et al. 2006, Woolley et al. 2012). Consistent with this, crown scorch or crown kill is included in all the species-specific models presented here. This is not surprising as tree survival is highly dependent on the amount of needles available for carbon acquisition via photosynthesis, and reductions in crown after fire reduce net photosynthesis and stomatal conductance (Sparks et al. 2016), even though water use efficiency can increase (Wallin et al. 2003). FOFEM predicts scorch height from flame length using the model in Van Wagner (1973), and this model does not distinguish between needle kill and bud kill (see Dickinson and Johnson 2001 for detailed processes involved in modeling crown tissue death). This difference can be substantial for ponderosa pine and Jeffrey pine (Hood et al. 2010) and indicates areas of the crown that can potentially recover if only the needles are scorched, but buds and branches are not killed (Dieterich 1979, Fowler et al. 2010). Our post-fire crown kill model is about 5 % more accurate than the crown scorch model, and we recommended using the crown kill model when possible for ponderosa pine and Jeffrey pine, especially when large differences exist in crown scorch and crown kill. Further research into the factors affecting plant hydraulic integrity (West et al. 2016) and thermal tolerance of bud and foliage tissues due to physical and physiological properties is needed to better understand and model crown injury from fire (Hare 1961, Dickinson and Johnson 2001). Michaletz and Johnson (2006) developed a crown scorch model capable of predicting differences in scorch and bud kill heights. This model deserves additional examination and validation as a possible replacement for the Van Wagner (1973) model in FOFEM.
Tree size or DBH is a common variable in post-fire mortality models (Woolley et al. 2012). This contrasts with our findings that DBH was influential in predicting post-fire tree mortality for only a few species: whitebark pine, lodgepole pine, western larch, white fir, and Douglas-fir. Predicted mortality increases with increasing DBH for white fir and, if attacked by bark beetles, for Douglas-fir. The interaction between bark beetles and DBH is consistent with the findings of Hood and Bentz (2007), as Douglas-fir beetle is known to preferentially attack larger trees (Furniss 1965). Though many studies report a positive correlation between tree size and resistance to fire, others have reported either a negative or no relationship with DBH and resistance (Swezy and Agee 1991, Stephens and Finney 2002, McHugh and Kolb 2003, Varner et al. 2007, Hood et al. 2010, Lerch et al. 2016). Several reasons may account for the conflicting results in the literature between DBH and post-fire mortality. Biological reasons include indirect effects such as reductions in tree vigor with age, bark-beetles attack preferences, and deep duff layers that can cause long-term smoldering (Hood 2010). The range of data used to develop models will also heavily influence variable importance, and the size range of trees varies widely in studies of post-fire tree mortality.
The new post-fire models that include cambium kill and bark beetle attack increase predictive accuracy in FOFEM by approximately 10 % to 50 % compared to the Ryan and Amman models. However, for most species, the new post-fire models increased accuracy <5 % over the new pre-fire models, and this small increase is likely not enough to justify the extra time needed to assess these additional variables. However, assessing cambium injury for whitebark pine, lodgepole pine, and Engelmann spruce increases model accuracy by over 15 % compared to the new pre-fire models. The large improvement when cambium injury is accounted for is most likely because these three species all have very thin bark and low-intensity fire burning around the tree bases will kill these trees even with little to no crown scorch (Hood et al. 2008).
We replaced the Ryan and Amman model with our new species-specific mortality models in FOFEM version 5.7 (Lutes 2012). While not the focus of this paper, it should be noted that the models were also added to BehavePlus 4.5 and later versions. BehavePlus only uses pre-fire models, while FOFEM uses both pre-fire and post-fire models. To use the post-fire models, users can now check a “Post Fire Injury” radio button in the Mortality module (Figure 2). The species drop-down menu changes to only include the 12 Western conifers studied here, and their synonyms and varieties. Required inputs are listed parenthetically after each species name, to denote if crown volume or crown length scorched or bark beetle attack information is required. The user then sets the probability mortality cutoff level (0 to 1) to determine the predicted mortality level (Figure 2). For example, if a cutoff of 0.5 is chosen, the mortality report will list the number of trees killed that have a predicted probability of mortality ≥0.5. The mortality graph shows the cutoff value as a red line to denote the threshold of crown damage that must be exceeded to cause mortality. This is different from how mortality is reported in the pre-fire option, which kills the percentage of trees of a given species, DBH, height, and crown ratio equal to the predicted probability of mortality (e.g., if 15 white fir are entered and the P m = 0.19, the pre-fire mortality report will list three dead trees, while the post-fire mortality report will list zero dead trees because they are all under the cutoff value of 0.5). The post-fire option allows an easy comparison of how bark beetles or cambium kill will affect mortality over a range of crown damage using the graphing option.
Versions of FOFEM starting with 5.7 offer improved accuracy in predicting 3-year post-fire tree mortality for white fir, subalpine fir, red fir, incense cedar, western larch, lodgepole pine, whitebark pine, Engelmann spruce, sugar pine, Douglas-fir, ponderosa pine, and Jeffrey pine. FOFEM now allows users to directly enter crown scorch, cambium injury, and beetle attacks to improve model accuracy for these species. The updated FOFEM User Guide includes a description of all mortality models used in the application. BehavePlus and versions of the Fire and Fuels Extension to the Forest Vegetation Simulator posted after 2013 also include the pre-fire mortality equations for the 12 species listed above.
These models and all other post-fire mortality models in FOFEM are empirically based. Therefore, extrapolations beyond the data used for model development will always be constrained, with uncertainties in accuracy (Butler and Dickinson 2010, Woolley et al. 2012). Improvements to process models may allow replacement of empirical models for some applications in the future (Dickinson and Johnson 2001, Michaletz and Johnson 2007, Butler and Dickinson 2010, Kavanagh et al. 2010, Michaletz et al. 2012, Woolley et al. 2012). However, it is difficult to envision process models completely subsuming empirical models anytime soon, as empirical models and decision support tools serve foundational roles for land management in predicting tree responses to fire because process models are often too complex for practical application.
While research into mechanisms of post-fire mortality is important, we also see the value in continued research to improve empirical models of post-fire mortality and test model accuracy. FOFEM continues to use the Ryan and Amman mortality model for the majority of species not described in this paper. With 219 species included in FOFEM, this means that more than 90 % of species have no data to support the mortality predictions generated. Future research should validate the Ryan and Amman model in FOFEM for these species to determine predictive accuracy and to explore improved model development. Very few models exist that include data from trees <10 cm DBH. There is a dire need for further research on fire-induced mortality for seedlings and saplings, such as was done by Battaglia et al. (2009) for ponderosa pine, and by Engber and Varner (2012) for Douglas-fir. Such data on smaller-tree resistance to fire can help plan treatment timelines that may achieve mortality targets using only fire, rather than combined mechanical and fire treatments. FOFEM does not account for differences in phenology, burn season, or fire type (e.g., prescribed or wildfire), and we did not examine these factors in our analyses. While such factors have been shown to affect tree mortality (Harrington 1987, 1993), our data did not allow separation by additional factors, while still retaining the same range of other variables such as DBH, crown scorch, and CKR. Therefore, it would be impossible to know if any differences in model results would be due to fire type, season, or a simply a change in data distribution. Woolley et al. (2012) detailed additional knowledge gaps and areas of future research needed to improve predictions of post-fire mortality for western North American conifers. Many of these gaps apply to other geographic regions as well. Incorporation of new research findings into fire effects software should occur routinely to ensure that managers can easily apply the most accurate science to fire-related land management decisions.
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We acknowledge funding from the Joint Fire Science Program under Project JFSP #05-2-1-105 and #16-01-04-8. We would like to thank R. King for help with the statistical analysis. S. Smith, D. Cluck, K. Ryan, and C. McHugh contributed data for model validation and development. We thank the three anonymous reviewers that improved a previous version of the manuscript.
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Hood, S., Lutes, D. Predicting Post-Fire Tree Mortality for 12 Western US Conifers Using the First Order Fire Effects Model (FOFEM). fire ecol 13, 66–84 (2017). https://doi.org/10.4996/fireecology.130290243